leila karami
2017-07-25 19:06:49 UTC
Dear gromacs users,
I am running CG MD simulation on a Rocks cluster using the following
command:
gmx_mpi mdrun -nb gpu -v -deffnm gpu_md -ntomp 16 -gpu_id 0>& md.job &
I tried the different value for the -ntomp option. With -ntomp 16 run will
finish sooner than the other values for -ntomp.
In this state, volatile gpu-util is 47%. How to increase this parameter?
nvidia-smi command:
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr.
ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute
M. |
|===============================+======================+======================|
| 2 TITAN X (Pascal) On | 0000:C1:00.0 Off |
N/A |
| 43% 71C P2 130W / 250W | 183MiB / 12189MiB | 47% E.
Process |
+-------------------------------+----------------------+----------------------+
Any help will be highly appreciated.
I am running CG MD simulation on a Rocks cluster using the following
command:
gmx_mpi mdrun -nb gpu -v -deffnm gpu_md -ntomp 16 -gpu_id 0>& md.job &
I tried the different value for the -ntomp option. With -ntomp 16 run will
finish sooner than the other values for -ntomp.
In this state, volatile gpu-util is 47%. How to increase this parameter?
nvidia-smi command:
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr.
ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute
M. |
|===============================+======================+======================|
| 2 TITAN X (Pascal) On | 0000:C1:00.0 Off |
N/A |
| 43% 71C P2 130W / 250W | 183MiB / 12189MiB | 47% E.
Process |
+-------------------------------+----------------------+----------------------+
Any help will be highly appreciated.
--
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