Discussion:
[gmx-users] How to view several data-sets in grace?
Li Daobing
2003-04-07 10:37:00 UTC
Permalink
Hello, gmx-users:
I user g_energy to generate .xvg file. I select serveral
data-sets but I only can see the first data-sets in grace-5.1.12
the command i use is "xmgrace foo.xvg".
How can I view several data-sets in one graph, or seperated
graphs in same page?

Regards,

Li Daobing
Y U Sasidhar
2003-04-07 11:26:01 UTC
Permalink
Post by Li Daobing
I user g_energy to generate .xvg file. I select serveral
data-sets but I only can see the first data-sets in grace-5.1.12
the command i use is "xmgrace foo.xvg".
How can I view several data-sets in one graph, or seperated
graphs in same page?
Regards,
Li Daobing
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xmgrace -nxy foo.xvg
will display all data in one graph.
I do not know how to separate them into indvidual graphs. Can some one
comment ?
--
Sasidhar
David
2003-04-07 13:34:00 UTC
Permalink
Post by Y U Sasidhar
Post by Li Daobing
I user g_energy to generate .xvg file. I select serveral
data-sets but I only can see the first data-sets in grace-5.1.12
the command i use is "xmgrace foo.xvg".
How can I view several data-sets in one graph, or seperated
graphs in same page?
In menu Edit/Arrange graphs you can create as many graphs as you like
in menu Edti/Set Operations you can move the datasets around
Post by Y U Sasidhar
Post by Li Daobing
Regards,
Li Daobing
_______________________________________________
gmx-users mailing list
gmx-users at gromacs.org
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Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-request at gromacs.org.
xmgrace -nxy foo.xvg
will display all data in one graph.
I do not know how to separate them into indvidual graphs. Can some one
comment ?
--
Sasidhar
_______________________________________________
gmx-users mailing list
gmx-users at gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-request at gromacs.org.
--
Groeten, David.
________________________________________________________________________
Dr. David van der Spoel, Dept. of Cell and Molecular Biology
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Y U Sasidhar
2003-04-07 11:27:01 UTC
Permalink
Post by Li Daobing
I user g_energy to generate .xvg file. I select serveral
data-sets but I only can see the first data-sets in grace-5.1.12
the command i use is "xmgrace foo.xvg".
How can I view several data-sets in one graph, or seperated
graphs in same page?
Regards,
Li Daobing
_______________________________________________
gmx-users mailing list
gmx-users at gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-request at gromacs.org.
xmgrace -nxy foo.xvg
will display all data in one graph.
I do not know how to separate them into indvidual graphs. Can some one
comment ?
--
Sasidhar
Erik Lindahl
2003-04-07 12:43:01 UTC
Permalink
Post by Li Daobing
I user g_energy to generate .xvg file. I select serveral
data-sets but I only can see the first data-sets in grace-5.1.12
the command i use is "xmgrace foo.xvg".
How can I view several data-sets in one graph, or seperated
graphs in same page?
Hi Li,

This used to be automatic in xmgr, but for xmgrace you have to type

xmgrace -nxy foo.xvg

Cheers,

Erik
Dmytro
2003-04-07 19:38:00 UTC
Permalink
And do someone know how to put two different graphs (e.g. RMSD and
gyration radius ) in one plot in that manner that on the left oordinate
axis one will have RMSD's nm scale and on the right one the gyration nm
scale. (abcise of course would be time)


Dima
--
PhD Student Dmytro Kovalskyy
MD Group
Rijksuniversiteit Groningen
Nijenborgh 4
9747 AG Groningen
The Netherlands

e-mail: d.kovalskyy at chem.rug.nl
David van der Spoel
2003-04-07 19:57:01 UTC
Permalink
Post by Dmytro
And do someone know how to put two different graphs (e.g. RMSD and
gyration radius ) in one plot in that manner that on the left oordinate
axis one will have RMSD's nm scale and on the right one the gyration nm
scale. (abcise of course would be time)
Yes!

you make two graphs on top of each other (edit/arrange graphs), put the
Y-axis for one of them on the right (just double click...) and remove
the labels etc. on one of the x-axes.
Post by Dmytro
Dima
--
PhD Student Dmytro Kovalskyy
MD Group
Rijksuniversiteit Groningen
Nijenborgh 4
9747 AG Groningen
The Netherlands
e-mail: d.kovalskyy at chem.rug.nl
_______________________________________________
gmx-users mailing list
gmx-users at gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-request at gromacs.org.
--
Groeten, David.
________________________________________________________________________
Dr. David van der Spoel, Dept. of Cell & Mol. Biology
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Anton Feenstra
2003-04-10 14:00:06 UTC
Permalink
Hi,


Did all of you know there is a wonderful manual to xmgrace?
It's on their homepage, hang on... Yes, I still have the link:

http://plasma-gate.weizmann.ac.il/Grace/doc/UsersGuide.html

It's kinda long, but defenitely worthwile and mostly complete!
--
Groetjes,

Anton
_____________ _______________________________________________________
| | |
| _ _ ___,| K. Anton Feenstra |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
|( | )| | | De Boelelaan 1083 - 1081 HV Amsterdam - Netherlands |
| \_/ \_/ | | | Tel: +31 20 44 47608 - Fax: +31 20 44 47610 |
| | Feenstra at chem.vu.nl - www.chem.vu.nl/~feenstra/ |
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