BLACK and file2.xvg will be in RED (Its default), You can change aslo.
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1. mpispawn.c:303 Unexpected exit status (shivkumar bale)
2. gromacs.. (Henry Ynag)
3. Re: Two Types of van de Waals interactions in one system
(XAvier Periole)
4. xmgrace plot (Henry Yang)
5. Re: xmgrace plot (Jon Fuller)
----------------------------------------------------------------------
Message: 1
Date: Mon, 7 Dec 2009 23:15:44 -0600
From: shivkumar bale <kumarbale at gmail.com>
Subject: [gmx-users] mpispawn.c:303 Unexpected exit status
To: gmx-users at gromacs.org
<2e20ba9d0912072115idce3ed6w3bfa288eeab1a941 at mail.gmail.com>
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Message: 2
Date: Tue, 8 Dec 2009 01:19:16 -0800 (PST)
From: Henry Ynag <henryynag at yahoo.com>
Subject: [gmx-users] gromacs..
To: gmx-users at gromacs.org
Message-ID: <903781.22164.qm at web113919.mail.gq1.yahoo.com>
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Hello everyone,
I am quite new to gromacs. I would like to know how can I calculate the
area per lipid for my simulations. I am running simulations with 128 DMPC
lipid bilayer. I have the output of 30 ns simulations. Also how can i make
a graph with this output.
Any help!
Henry
Biochemistry
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Message: 3
Date: Tue, 8 Dec 2009 10:52:00 +0100
From: XAvier Periole <x.periole at rug.nl>
Subject: Re: [gmx-users] Two Types of van de Waals interactions in one
system
To: Discussion list for GROMACS users <gmx-users at gromacs.org>
Message-ID: <7ECBCABE-B1AF-45E5-9723-1D87364FBF9B at rug.nl>
Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes
One solution would be to use tabulated potential for which the
analytical form does not matter.
Dear all,
Has anyone tried to use 2 van de Waals interaction types in one
system? For example, the system includes two components A and B.
The van de Waas interaction for A is LJ type, while for B
Buckingham form is used. Can GROMACS support two forms
simultaneously?
No. How would you describe the vdW interaction between an atom from
A and one from B?
If the reason for this question is based on a desire to mix two
force fields - don't.
Mark
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Message: 4
Date: Tue, 8 Dec 2009 02:51:12 -0800 (PST)
From: Henry Yang <henryynag at yahoo.com>
Subject: [gmx-users] xmgrace plot
To: gromacs <gmx-users at gromacs.org>
Message-ID: <975347.17369.qm at web113912.mail.gq1.yahoo.com>
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Hello everyone,
I am also new to xmgrace. I have two .xvg file which I have got from the
simulation data analysis. How can I open both of them in one xmgrace graph
with two distinct color? How can I proceed with the comand?
I know this is very basic but I have to learn!
Pls give me response.
Henry
Biochemistry
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Message: 5
Date: Tue, 8 Dec 2009 10:53:25 +0000
From: Jon Fuller <jonathan.fuller at gmail.com>
Subject: Re: [gmx-users] xmgrace plot
To: Discussion list for GROMACS users <gmx-users at gromacs.org>
<76dd1c620912080253t6b8ce2dehfa65e42bda43a231 at mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"
From the command line you can type xmgrace file1.xvg file2.xvg (where
file1
and file2 are the filenames!).
Jon
2009/12/8 Henry Yang <henryynag at yahoo.com>
Hello everyone,
I am also new to xmgrace. I have two .xvg file which I have got from the
simulation data analysis. How can I open both of them in one xmgrace
graph
with two distinct color? How can I proceed with the comand?
I know this is very basic but I have to learn!
Pls give me response.
Henry
Biochemistry
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